CL - Detailed 1-on-1 Alignment


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Entity Selection

Select two entities to compare - the first is from the PDB or a file you upload, the second is from the PDB

Entity 1:


 Entity From PDB  Find Probe Structure: Moose | PDB/3DB | MMDB
 User File: Chain ID:


from residues to


Entity 2:

from residues to


Decision Level:

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  Interpreting Results

Only use this form if you wish to select individual properties rather than predefined property subsets. Refer to the citations for details.

Select Features:


SeqCodeA SeqCodeB SeqCodeC SeqCodeD SeqCodeE LKabSanA LKabSanB LKabSanC LKabSanD LKabSanE LDistAC LDistAD LDistAE LDistBE LDistCE LDistAB LDistBC LDistBD LDistCD LDistDE LDistMA LDistMB LDistMC LDistMD LDistME PDistPA PDistPB PDistPC PDistPD PDistPE EDistGA EDistGB EDistGC EDistGD EDistGE TDistLM TDistLK TDistLR TDistIR TDistMR TDistLI TDistIM TDistIK TDistMK TDistKR TDistGL TDistGI TDistGM TDistGK TDistGR UDistLA UDistLB UDistLC UDistLD UDistLE DDistRA DDistRB DDistRC DDistRD DDistRE PNumCntA PNumCntB PNumCntC PNumCntD PNumCntE LReExpA LReExpB LReExpC LReExpD LReExpE LRePolA LRePolB LRePolC LRePolD LRePolE SeqExpA SeqExpB SeqExpC SeqExpD SeqExpE SeqPolA SeqPolB SeqPolC SeqPolD SeqPolE SeqVolA SeqVolB SeqVolC SeqVolD SeqVolE SeqBndA SeqBndB SeqBndC SeqBndD SeqBndE SeqWghA SeqWghB SeqWghC SeqWghD SeqWghE SeqNearA SeqNearB SeqNearC SeqNearD SeqNearE SeqFrqA SeqFrqB SeqFrqC SeqFrqD SeqFrqE SeqUseA SeqUseB SeqUseC SeqUseD SeqUseE SeqAlpA SeqAlpB SeqAlpC SeqAlpD SeqAlpE SeqBetA SeqBetB SeqBetC SeqBetD SeqBetE SeqHydA SeqHydB SeqHydC SeqHydD SeqHydE SeqIepA SeqIepB SeqIepC SeqIepD SeqIepE PRdA_PA PRdB_PB PRdC_PC PRdD_PD PRdE_PE PRdP_PA PRdP_PB PRdP_PC PRdP_PD PRdP_PE ERdA_GA ERdB_GB ERdC_GC ERdD_GD ERdE_GE ERdP_GA ERdP_GB ERdP_GC ERdP_GD ERdP_GE URdA_LA URdB_LB URdC_LC URdD_LD URdE_LE URdP_LA URdP_LB URdP_LC URdP_LD URdP_LE DRdA_RA DRdB_RB DRdC_RC DRdD_RD DRdE_RE DRdP_RA DRdP_RB DRdP_RC DRdP_RD DRdP_RE LAnglABE LAnglACD LAnglACE LAnglADE LAnglBCE LAnglABC LAnglABD LAnglBCD LAnglBDE LAnglCDE LAnglAMC LAnglAMD LAnglAME LAnglBME LAnglCME LAnglAMB LAnglBMC LAnglBMD LAnglCMD LAnglDME PAnglPMA PAnglPMB PAnglPMC PAnglPMD PAnglPME PAnglAPC PAnglAPD PAnglAPE PAnglBPE PAnglCPE PAnglAPB PAnglBPC PAnglBPD PAnglCPD PAnglDPE EAnglGMA EAnglGMB EAnglGMC EAnglGMD EAnglGME EAnglAGC EAnglAGD EAnglAGE EAnglBGE EAnglCGE EAnglAGB EAnglBGC EAnglBGD EAnglCGD EAnglDGE TAnglLIR TAnglLMK TAnglLMR TAnglLKR TAnglIMR TAnglLIM TAnglLIK TAnglIMK TAnglIKR TAnglMKR TAnglLGM TAnglLGK TAnglLGR TAnglIGR TAnglMGR TAnglLGI TAnglIGM TAnglIGK TAnglMGK TAnglKGR TAnglMLG TAnglMJR TAnglMJG TAnglMRG TAnglLJG TAnglMLJ TAnglMLR TAnglLJR TAnglLRG TAnglJRG TAnglMPJ TAnglMPR TAnglMPG TAnglLPG TAnglJPG TAnglMPL TAnglLPJ TAnglLPR TAnglJPR TAnglRPG UAnglLMA UAnglLMB UAnglLMC UAnglLMD UAnglLME DAnglRMA DAnglRMB DAnglRMC DAnglRMD DAnglRME UAnglALC UAnglALD UAnglALE UAnglBLE UAnglCLE UAnglALB UAnglBLC UAnglBLD UAnglCLD UAnglDLE DAnglARC DAnglARD DAnglARE DAnglBRE DAnglCRE DAnglARB DAnglBRC DAnglBRD DAnglCRD DAnglDRE PCrsPMAC PCrsPMAD PCrsPMAE PCrsPMBE PCrsPMCE PCrsPMAB PCrsPMBC PCrsPMBD PCrsPMCD PCrsPMDE ECrsGMAC ECrsGMAD ECrsGMAE ECrsGMBE ECrsGMCE ECrsGMAB ECrsGMBC ECrsGMBD ECrsGMCD ECrsGMDE UCrsLMAC UCrsLMAD UCrsLMAE UCrsLMBE UCrsLMCE UCrsLMAB UCrsLMBC UCrsLMBD UCrsLMCD UCrsLMDE DCrsRMAC DCrsRMAD DCrsRMAE DCrsRMBE DCrsRMCE DCrsRMAB DCrsRMBC DCrsRMBD DCrsRMCD DCrsRMDE LTwtABCD LTwtABCE LTwtABDE LTwtACDE LTwtBCDE LTwtMBDA LTwtMBDC LTwtMBDE LTwtAMCE LTwtBMCD LTwtPhiA LTwtPhiB LTwtPhiC LTwtPhiD LTwtPhiE LTwtPsiA LTwtPsiB LTwtPsiC LTwtPsiD LTwtPsiE PTwtPABE PTwtPACD PTwtPACE PTwtPADE PTwtPBCE PTwtPABC PTwtPABD PTwtPBCD PTwtPBDE PTwtPCDE PTwtAPMC PTwtAPMD PTwtAPME PTwtBPME PTwtCPME PTwtAPMB PTwtBPMC PTwtBPMD PTwtCPMD PTwtDPME PTwtPACM PTwtPADM PTwtPAEM PTwtPBEM PTwtPCEM PTwtPABM PTwtPBCM PTwtPBDM PTwtPCDM PTwtPDEM ETwtGABE ETwtGACD ETwtGACE ETwtGADE ETwtGBCE ETwtGABC ETwtGABD ETwtGBCD ETwtGBDE ETwtGCDE ETwtAGMC ETwtAGMD ETwtAGME ETwtBGME ETwtCGME ETwtAGMB ETwtBGMC ETwtBGMD ETwtCGMD ETwtDGME ETwtGACM ETwtGADM ETwtGAEM ETwtGBEM ETwtGCEM ETwtGABM ETwtGBCM ETwtGBDM ETwtGCDM ETwtGDEM TTwtLIMK TTwtLIMR TTwtLIKR TTwtLMKR TTwtIMKR TTwtGIKL TTwtGIKM TTwtGIKR TTwtLGMR TTwtIGMK TTwtMLJR TTwtMLJG TTwtMLRG TTwtMJRG TTwtLJRG TTwtPLRM TTwtPLRJ TTwtPLRG TTwtMPJG TTwtLPJR UTwtLABE UTwtLACD UTwtLACE UTwtLADE UTwtLBCE UTwtLABC UTwtLABD UTwtLBCD UTwtLBDE UTwtLCDE DTwtRABE DTwtRACD DTwtRACE DTwtRADE DTwtRBCE DTwtRABC DTwtRABD DTwtRBCD DTwtRBDE DTwtRCDE UTwtALMC UTwtALMD UTwtALME UTwtBLME UTwtCLME UTwtALMB UTwtBLMC UTwtBLMD UTwtCLMD UTwtDLME DTwtARMC DTwtARMD DTwtARME DTwtBRME DTwtCRME DTwtARMB DTwtBRMC DTwtBRMD DTwtCRMD DTwtDRME UTwtLACM UTwtLADM UTwtLAEM UTwtLBEM UTwtLCEM UTwtLABM UTwtLBCM UTwtLBDM UTwtLCDM UTwtLDEM DTwtRACM DTwtRADM DTwtRAEM DTwtRBEM DTwtRCEM DTwtRABM DTwtRBCM DTwtRBDM DTwtRCDM DTwtRBDM DTwtRCDM DTwtRDEM