Entity Selection

Select two entities to compare - the first is from the PDB or a file you upload, the second is from the PDB

Entity 1:

 Entity From PDB  Find Probe Structure: Moose | PDB/3DB | MMDB
 User File: Chain ID:

from residues to

Entity 2:

Select Features:

Local conformational features based on pentapeptides
Sequence similarity by mutational matrix
Properties of amino acids (volume, charge etc.)
Neighboring decapeptide conformational features
Conformational features about a 25Å centroid
Topological conformational features
Globular conformational features

Select individual properties. Only use this option if you wish to select individual properties rather than predefined property subsets. Refer to the citations for details.

Superimpose: Complete Alignment Fragments with Positive Likeness Best Fragment Plot: XY YZ ZX Local Alignment